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Add initial genetics code

master
C. J. Howard 3 years ago
parent
commit
d4c162c1e0
3 changed files with 139 additions and 0 deletions
  1. +38
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      src/game/genetics/allele.hpp
  2. +33
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      src/game/genetics/gene.hpp
  3. +68
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      src/game/genetics/zygosity.hpp

+ 38
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src/game/genetics/allele.hpp View File

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/*
* Copyright (C) 2020 Christopher J. Howard
*
* This file is part of Antkeeper source code.
*
* Antkeeper source code is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Antkeeper source code is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Antkeeper source code. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef ANTKEEPER_ALLELE_HPP
#define ANTKEEPER_ALLELE_HPP
namespace dna
{
/// Enumerates allele types.
enum class allele: bool
{
/// Indicates an allele is recessive.
recessive = false,
/// Indicates an allele is dominant.
dominant = true
};
} // namespace dna
#endif // ANTKEEPER_ALLELE_HPP

+ 33
- 0
src/game/genetics/gene.hpp View File

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/*
* Copyright (C) 2020 Christopher J. Howard
*
* This file is part of Antkeeper source code.
*
* Antkeeper source code is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Antkeeper source code is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Antkeeper source code. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef ANTKEEPER_GENE_HPP
#define ANTKEEPER_GENE_HPP
#include "allele.hpp"
namespace dna
{
/// A gene with two alleles.
typedef std::array<allele, 2> gene;
} // namespace dna
#endif // ANTKEEPER_GENE_HPP

+ 68
- 0
src/game/genetics/zygosity.hpp View File

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/*
* Copyright (C) 2020 Christopher J. Howard
*
* This file is part of Antkeeper source code.
*
* Antkeeper source code is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Antkeeper source code is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Antkeeper source code. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef ANTKEEPER_ZYGOSITY_HPP
#define ANTKEEPER_ZYGOSITY_HPP
#include "gene.hpp"
namespace dna
{
/// A homozygous recessive gene.
static constexpr gene homozygous_recessive = {allele::recessive, allele::recessive};
/// A homozygous dominant gene.
static constexpr gene homozygous_dominant = {allele::recessive, allele::recessive};
/// Returns `true` if gene @p x is heterozygous, `false` otherwise.
bool is_heterozygous(const gene& x);
/// Returns `true` if gene @p x is homozygous, `false` otherwise.
bool is_homozygous(const gene& x);
/// Returns `true` if gene @p x is homozygous recessive, `false` otherwise.
bool is_homozygous_recessive(const gene& x);
/// Returns `true` if gene @p x is homozygous dominant, `false` otherwise.
bool is_homozygous_dominant(const gene& x);
inline bool is_heterozygous(const gene& x)
{
return x[0] != x[1];
}
inline bool is_homozygous(const gene& x)
{
return x[0] == x[1];
}
inline bool is_homozygous_recessive(const gene& x)
{
return x == homozygous_recessive;
}
inline bool is_homozygous_dominant(const gene& x)
{
return x == homozygous_dominant;
}
} // namespace dna
#endif // ANTKEEPER_ZYGOSITY_HPP

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