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- /*
- * Copyright (C) 2020 Christopher J. Howard
- *
- * This file is part of Antkeeper source code.
- *
- * Antkeeper source code is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * Antkeeper source code is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Antkeeper source code. If not, see <http://www.gnu.org/licenses/>.
- */
-
- #ifndef ANTKEEPER_GENE_HPP
- #define ANTKEEPER_GENE_HPP
-
- namespace dna
- {
-
- /**
- * Isolates a pair of bits and returns them in the two least significant bits.
- *
- * @param x Diploid chromosome with interleaved alleles.
- * @param i Index of the pair to isolate.
- * @return Isolated pair of bits in the two least significant bits.
- */
- template <class T>
- T isolate(T x, int i)
- {
- return (x >> (i << 1)) & 0b11;
- }
-
- /**
- * Isolates a sequence of genes and returns their alleles in the least significant bits.
- *
- * @param x Diploid chromosome with interleaed alleles.
- * @param i Index of the first gene in the sequence.
- * @param n Length of the sequence, in genes.
- * @return Alleles of the sequeuence in the least significant bits.
- */
- template <class T>
- T isolate_n(T x, int i, int n)
- {
- T mask = (T(1) << (n << 1)) - 1;
- return (x >> (i << 1)) & mask;
- }
-
- } // namespace dna
-
- #endif // ANTKEEPER_GENE_HPP
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