💿🐜 Antkeeper source code
https://antkeeper.com
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68 lines
2.0 KiB
68 lines
2.0 KiB
/*
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* Copyright (C) 2021 Christopher J. Howard
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*
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* This file is part of Antkeeper source code.
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*
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* Antkeeper source code is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* Antkeeper source code is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with Antkeeper source code. If not, see <http://www.gnu.org/licenses/>.
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*/
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#ifndef ANTKEEPER_GENETICS_BASE_HPP
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#define ANTKEEPER_GENETICS_BASE_HPP
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namespace genetics {
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namespace base {
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/**
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* Returns the number of bases that are represented by both IUPAC degenerate base symbols.
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*
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* @param a First IUPAC degenerate base symbol.
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* @param b Second IUPAC degenerate base symbol.
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* @return Number of bases represented by both symbols.
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*/
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int compare(char a, char b);
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/**
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* Transcribes an IUPAC degenerate base symbol between DNA and RNA, swapping `T` for `U` or `U` for `T`.
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*
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* @param symbol IUPAC degenerate base symbol.
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* @return `U` if @p symbol was `T`, `T` if @p symbol was `U`, or `symbol` if @p symbol was neither `T` nor `U`.
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*/
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char transcribe(char symbol);
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namespace dna
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{
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/**
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* Returns the DNA complement of an IUPAC degenerate base symbol.
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*
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* @param symbol IUPAC degenerate base symbol.
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* @return IUPAC degenerate base symbol of DNA complement.
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*/
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char complement(char symbol);
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}
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namespace rna
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{
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/**
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* Returns the RNA complement of an IUPAC degenerate base symbol.
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*
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* @param symbol IUPAC degenerate base symbol.
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* @return IUPAC degenerate base symbol of RNA complement.
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*/
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char complement(char symbol);
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}
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} // namespace base
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} // namespace genetics
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#endif // ANTKEEPER_GENETICS_BASE_HPP
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