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@ -20,66 +20,45 @@ |
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#ifndef ANTKEEPER_GENETIC_OPERATORS_HPP
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#ifndef ANTKEEPER_GENETIC_OPERATORS_HPP
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#define ANTKEEPER_GENETIC_OPERATORS_HPP
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#define ANTKEEPER_GENETIC_OPERATORS_HPP
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#include <cstdlib>
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#include <iterator>
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namespace dna |
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namespace dna |
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{ |
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{ |
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/**
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/**
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* Performs a genetic crossover on a range of interleaved allele blocks defined by `[first1, last1)`. |
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* Performs a genetic crossover on two blocks of interleaved alleles. |
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* |
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* |
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* @param[in] first1,last1 First range of interleaved allele blocks to crossover. |
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* @param[in] first2 Beginning of the the second range of interleaved allele blocks to crossover. |
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* @param[out] d_first Beginning of the destination range. |
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* @param[in,out] g A uniform random bit generator. |
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* @return Output iterator to the block past the last block crossed over. |
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* @param a Interleaved allele block of the first parent. |
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* @param b Interleaved allele block of the second parent. |
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* @param g Uniform random bit generator. |
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* @return Interleaved allele block of the new offspring. |
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*/ |
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*/ |
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template <class InputIt1, class InputIt2, class OutputIt, class URBG> |
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OutputIt crossover(InputIt1 first1, InputIt1 last1, InputIt2 first2, OutputIt d_first, URBG&& g) |
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template <class T, class URBG> |
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T crossover(T a, T b, URBG&& g) |
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{ |
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{ |
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typedef typename std::iterator_traits<OutputIt>::value_type block_t; |
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static constexpr std::size_t bits_per_block = sizeof(block_t) << 3; |
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T c = 0, i = 1; |
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while (first1 != last1) |
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do |
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{ |
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{ |
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block_t block = 0; |
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for (std::size_t i = 0; i < bits_per_block;) |
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{ |
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block_t allele1 = ((*first1) >> (i + (g() % 2))) & 1; |
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block_t allele2 = ((*first2) >> (i + (g() % 2))) & 1; |
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block |= allele1 << i++; |
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block |= allele2 << i++; |
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} |
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*d_first++ = block; |
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++first1; |
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++first2; |
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c |= (a >> (g() % 2)) & i; |
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i <<= 1; |
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c |= (b << (g() % 2)) & i; |
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i <<= 1; |
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} |
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} |
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while (i); |
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return d_first; |
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return c; |
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} |
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} |
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/**
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/**
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* Performs a genetic mutation by flipping the bit of a single allele in a range of interleaved allele blocks defined by `[first1, last1)`. |
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* Mutates a single allele in an interleaved allele block. |
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* |
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* |
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* @param[in,out] first,last Range of interleaved allele blocks to mutate. |
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* @param[in,out] g A uniform random bit generator. |
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* @return Locus of the mutated allele. |
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* @param x Interleaved allele block to mutate. |
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* @param g Uniform random bit generator. |
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* @return Mutated copy of @p x. |
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*/ |
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*/ |
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template <class RandomIt, class URBG> |
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typename std::iterator_traits<RandomIt>::difference_type mutate(RandomIt first, RandomIt last, URBG&& g) |
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template <class T, class URBG> |
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T mutate(T x, URBG&& g) |
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{ |
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{ |
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typedef typename std::iterator_traits<RandomIt>::value_type block_t; |
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typedef typename std::iterator_traits<RandomIt>::difference_type diff_t; |
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static constexpr diff_t bits_per_block = sizeof(block_t) << 3; |
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diff_t i = g() % ((last - first) * bits_per_block); |
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first[i / bits_per_block] ^= block_t(1) << (i % bits_per_block); |
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return i; |
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return x ^ (T(1) << (g() % (sizeof(T) << 3))); |
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} |
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} |
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} // namespace dna
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} // namespace dna
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