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- /*
- * Copyright (C) 2020 Christopher J. Howard
- *
- * This file is part of Antkeeper source code.
- *
- * Antkeeper source code is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * Antkeeper source code is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Antkeeper source code. If not, see <http://www.gnu.org/licenses/>.
- */
-
- #ifndef ANTKEEPER_GENETIC_OPERATORS_HPP
- #define ANTKEEPER_GENETIC_OPERATORS_HPP
-
- #include <cstdlib>
- #include <iterator>
-
- namespace dna
- {
-
- /**
- * Performs a genetic crossover on a range of interleaved allele blocks defined by `[first1, last1)`.
- *
- * @param[in] first1,last1 First range of interleaved allele blocks to crossover.
- * @param[in] first2 Beginning of the the second range of interleaved allele blocks to crossover.
- * @param[out] d_first Beginning of the destination range.
- * @param[in,out] g A uniform random bit generator.
- * @return Output iterator to the block past the last block crossed over.
- */
- template <class InputIt1, class InputIt2, class OutputIt, class URBG>
- OutputIt crossover(InputIt1 first1, InputIt1 last1, InputIt2 first2, OutputIt d_first, URBG&& g)
- {
- typedef typename std::iterator_traits<OutputIt>::value_type block_t;
- static constexpr std::size_t bits_per_block = sizeof(block_t) << 3;
-
- while (first1 != last1)
- {
- block_t block = 0;
-
- for (std::size_t i = 0; i < bits_per_block;)
- {
- block_t allele1 = ((*first1) >> (i + (g() % 2))) & 1;
- block_t allele2 = ((*first2) >> (i + (g() % 2))) & 1;
-
- block |= allele1 << i++;
- block |= allele2 << i++;
- }
-
- *d_first++ = block;
- ++first1;
- ++first2;
- }
-
- return d_first;
- }
-
- /**
- * Performs a genetic mutation by flipping the bit of a single allele in a range of interleaved allele blocks defined by `[first1, last1)`.
- *
- * @param[in,out] first,last Range of interleaved allele blocks to mutate.
- * @param[in,out] g A uniform random bit generator.
- * @return Locus of the mutated allele.
- */
- template <class RandomIt, class URBG>
- typename std::iterator_traits<RandomIt>::difference_type mutate(RandomIt first, RandomIt last, URBG&& g)
- {
- typedef typename std::iterator_traits<RandomIt>::value_type block_t;
- typedef typename std::iterator_traits<RandomIt>::difference_type diff_t;
- static constexpr diff_t bits_per_block = sizeof(block_t) << 3;
-
- diff_t i = g() % ((last - first) * bits_per_block);
- first[i / bits_per_block] ^= block_t(1) << (i % bits_per_block);
-
- return i;
- }
-
- } // namespace dna
-
- #endif // ANTKEEPER_GENETIC_OPERATORS_HPP
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